If you’re looking for a healthier yet indulgent side dish, Spaghetti Squash Au Gratin is a perfect choice. This recipe turns humble spaghetti squash into a creamy, cheesy, and satisfying casserole that rivals traditional potato au gratin. The tender strands of squash soak up a rich cheese sauce, flavored with garlic and a hint of nutmeg, creating a dish that’s both comforting and wholesome.
This au gratin is perfect for weeknight dinners, holiday meals, or when you want to impress guests with a light yet decadent side. The best part? It’s naturally gluten-free, low-carb, and packed with nutrients, while still delivering the creamy, cheesy texture everyone loves. Roasting the squash before mixing it with a silky cheese sauce enhances its natural sweetness, creating layers of flavor that melt in your mouth.
With simple ingredients, straightforward steps, and a beautiful golden crust on top, this Spaghetti Squash Au Gratin is a versatile dish everyone can enjoy. Whether you’re a squash lover or just looking for a low-carb alternative to potatoes or pasta, this casserole will become a favorite in your recipe collection.
Prep Time: 20 minutes
Cook Time: 40 minutes
Total Time: 60 minutes
Difficulty Level: Easy
Servings: 4–6
What Makes This Spaghetti Squash Au Gratin Special?
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Creamy cheese sauce: A smooth blend of cream, garlic, and cheese that coats every strand of squash.
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Low-carb, healthy twist: Uses spaghetti squash instead of traditional potatoes for a lighter meal.
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Golden, crispy topping: Breadcrumbs and extra cheese baked to perfection create a beautiful crust.
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Quick and easy preparation: Minimal prep with simple ingredients and straightforward steps.
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Customizable flavor: Add herbs like thyme, rosemary, or even cooked bacon for extra taste.
These features make the casserole perfect for holidays, weeknight dinners, or as a comforting dish for family gatherings. Simple techniques like roasting the squash and preparing a creamy sauce ensure maximum flavor with minimal effort.
Ingredient Notes
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Spaghetti Squash
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Provides a healthy, low-carb base that mimics pasta texture.
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Substitute: Zucchini noodles for a slightly different flavor and texture.
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Cheese (Cheddar, Gruyère, or Parmesan)
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Creates a creamy, flavorful sauce and golden crust.
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Substitute: Mozzarella for mild, melty texture.
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Heavy Cream
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Adds richness and creaminess to the sauce.
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Substitute: Half-and-half or coconut milk for a lighter or dairy-free option.
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Garlic
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Enhances the savory flavor and depth.
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Substitute: Garlic powder if fresh garlic is unavailable.
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Breadcrumbs
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Provides a crunchy topping to contrast the creamy filling.
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Substitute: Panko or crushed nuts for gluten-free options.
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Butter
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Used in sauce and topping for richness.
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Substitute: Olive oil for a lighter option.
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Special equipment: roasting pan, skillet for sauce, 9×13 casserole dish, and mixing bowl.
How To Make Spaghetti Squash Au Gratin

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Prepare the squash
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Preheat oven to 400°F (200°C).
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Cut spaghetti squash in half lengthwise, remove seeds, brush with olive oil, season with salt and pepper.
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Roast cut side down for 30 minutes until tender.
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Make the cheese sauce
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In a skillet, melt 2 tablespoons butter over medium heat.
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Add 2 minced garlic cloves, cook 1 minute until fragrant.
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Whisk in 1 cup heavy cream, 1/2 teaspoon nutmeg, salt, and pepper.
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Stir in 1 1/2 cups shredded cheese until melted and smooth.
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Combine squash and sauce
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Scrape roasted squash into strands with a fork.
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Toss strands with cheese sauce until evenly coated.
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Prepare topping
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Mix 1/2 cup breadcrumbs with 2 tablespoons melted butter and 1/4 cup shredded cheese.
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Assemble and bake
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Transfer squash mixture to a greased 9×13 dish.
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Sprinkle topping evenly.
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Bake at 375°F (190°C) for 15–20 minutes until golden and bubbly.
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Serve warm
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Let rest 5 minutes before serving to set. Garnish with parsley if desired.
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Storage Options
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Room Temperature
Serve immediately for best flavor and texture. -
Refrigeration
Store in airtight containers for up to 3 days. Reheat in the oven at 350°F (175°C) for 10–15 minutes. -
Freezing
Freeze baked casserole for up to 2 months. Thaw overnight in refrigerator, then reheat in oven. -
Reheating Tips
Cover with foil to prevent topping from burning. Add extra cheese for creaminess.
Variations and Substitutions
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Vegetable Mix
Add spinach, mushrooms, or roasted bell peppers for more flavor and nutrients. -
Bacon or Ham
Stir in cooked bacon or diced ham for a smoky, savory twist. -
Different Cheeses
Blend Gruyère and Parmesan for nutty flavor or use mozzarella for a gooey texture. -
Spicy Kick
Add a pinch of cayenne, red pepper flakes, or jalapeños to the cheese sauce. -
Herb Infusion
Thyme, rosemary, or chives complement the creamy cheese sauce beautifully.
Frequently Asked Questions
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Can I make this ahead of time?
Yes, prepare the sauce and squash in advance. Assemble and bake before serving. -
Is this dish low-carb?
Yes, using spaghetti squash instead of potatoes or pasta keeps it low-carb. -
Can I use frozen squash?
Thaw and drain excess moisture before roasting. -
Can I make it dairy-free?
Substitute heavy cream with coconut milk and cheese with vegan cheese. -
How do I prevent a soggy topping?
Ensure squash is roasted and drained of excess liquid before mixing with sauce. -
Can I add meat?
Yes, cooked chicken, ham, or bacon work well.
Conclusion
Spaghetti Squash Au Gratin is a comforting, cheesy, and wholesome side dish that works for weeknight dinners, holidays, or family gatherings. The tender strands of squash soak up creamy cheese sauce, topped with a golden, crispy layer that’s irresistible. With customizable options for veggies, cheese, and meat, it’s versatile enough to please everyone at the table. Try this recipe, and enjoy a delicious, low-carb twist on a classic au gratin.
PrintSpaghetti Squash Au Gratin – Creamy, Cheesy, and Comforting
- Prep Time: 20 minutes
- Cook Time: 40 minutes
- Total Time: 1 hour
- Yield: 4–6 servings 1x
Ingredients
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1 medium spaghetti squash
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2 tablespoons butter
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2 cloves garlic, minced
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1 cup heavy cream
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1/2 teaspoon nutmeg
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Salt and pepper to taste
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1 1/2 cups shredded cheese (cheddar, Gruyère, or mix)
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1/2 cup breadcrumbs
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2 tablespoons melted butter
Instructions
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Roast spaghetti squash at 400°F for 30 minutes.
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Melt butter, cook garlic, add cream, nutmeg, salt, pepper, then stir in cheese.
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Toss roasted squash strands with cheese sauce.
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Combine breadcrumbs and melted butter, sprinkle over casserole.
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Bake at 375°F for 15–20 minutes until golden. Serve warm.
Nutrition
- Calories: 280
- Fat: 20g
- Carbohydrates: 15g
- Protein: 12g